IBS: achieving digestive comfort by addressing root causes
IBS symptoms like bloating, pain, and irregular bowel movements can be disruptive. Functional medicine takes a whole-body approach, identifying triggers and restoring gut health for long-term symptom relief.

Treat IBS naturally
Are you looking for a natural treatment for irritable bowel syndrome from IBS specialists? Our practitioners based in Melbourne can help. This page covers:
At Melbourne Functional Medicine, our innovative and science-based IBS functional medicine treatment is holistic and personalised, so you can feel happy in your body again.
What is IBS?
Understanding your condition
IBS, or Irritable Bowel Syndrome, is a chronic functional digestive disorder that can include a collection of recurrent symptoms, with the most common symptoms being diarrhoea, constipation (or both), bloating, and pain.
This common condition affects more women than men and can impact all areas of life, limiting work and social activities while causing embarrassment and discomfort.


What is IBS?
Understanding your condition
IBS, or Irritable Bowel Syndrome, is a chronic functional digestive disorder that can include a collection of recurrent symptoms, with the most common symptoms being diarrhoea, constipation (or both), bloating, and pain.
This common condition affects more women than men and can impact all areas of life, limiting work and social activities while causing embarrassment and discomfort.

Providing a holistic treatment for IBS
While IBS presents in the digestive tract, factors outside the digestive system also play a role in the triggering and persistence of symptoms. This is why our IBS specialists conduct a thorough health assessment of each patient to understand the underlying causes and factors that might be contributing to their IBS. This truly personalised approach to treating IBS delivers a high rate of success with patients that we’re proud to offer.
IBS symptoms
Wondering what irritable bowel syndrome is, or what the symptoms of IBS are? The diagnosis of IBS is given to those with 2 or more of the below symptoms persisting over 3 months or more:
- Bloating, cramping
- Diarrhoea, or loose stools
- Urgency
- Constipation, or dry, irregular bowel movement
- Reflux
- Fluctuating diarrhoea and constipation
- Pain on defecation
- Visceral pain/hypersensitivity to abdominal areas
- Migraines or headaches can sometimes accompany other symptoms
How is IBS diagnosed?
The symptoms identified come from a list titled the Rome IV criteria. They are:
Recurrent abdominal pain on average at least 1 day/week in the last 3 months, associated with two or more of the following criteria*:
- Related to defecation
- Associated with a change in the frequency of stool
- Associated with a change in form (appearance) of stool
*fulfilled for the last 3 months with symptom onset at least 6 months prior to diagnosis
Often when a patient is assessed for IBS, the practitioner may also consider inflammatory bowel diseases (IBD) Crohn’s disease and Ulcerative Colitis. Irritable bowel syndrome symptoms differ from IBD, which are characterised by chronic inflammation throughout the digestive tract and are generally diagnosed by endoscopy, colonoscopy or sigmoidoscopy. IBS is often diagnosed when other conditions such as IBD have been ruled out.
What are the different types of IBS?
IBS is broken into 5 major subtypes:
- IBS-C – characterised by constipation
- IBS-D – characterised by diarrhoea
- IBS-M – characterised by fluctuations of diarrhoea and constipation
- IBS-U – refers to unspecified or undetermined – generally applied when symptoms don’t fit the other subtypes
- Post-infectious IBS – which often occurs after an infection, or following antibiotic treatment
Let's get to the root of your IBS to help your gut heal, naturally
What causes IBS?
The exact cause of IBS is unknown, however, it is believed to be related to a combination of factors, including gut-brain communication issues, stress, diet and more recently gut microbiota imbalances.
More research will help illuminate all of the precise irritable bowel syndrome causes, however so far, research has identified that a disturbed microbial make-up, or dysbiosis of the microbiome, can be a feature of IBS. Chronic stress, anxiety or mood disorders are known to alter digestive function, which can disrupt the pH of the microbiome, affect the function of bile acids and compromise fat and carbohydrate absorption. These changes can alter species of bacteria in the small and large intestines, the numbers of microbiota and the diversity. The resulting reduction of short-chain fatty acid producing bacteria such as Roseburia and Eubacterium rectale can have an impact on the inflammation of the colon, and contribute further to the severity of symptoms of irritable bowel syndrome.
Alongside strong connections to stress and anxiety, other physiological causes include pathogenic parasites, disorders of gut-brain interactions (DGBI), low stomach acid SIBO (small intestinal bacterial overgrowth) and intestinal hyperpermeability (AKA leaky gut).
Food sensitivities or intolerances such as FODMAPs can cause or exacerbate symptoms, and in some cases, intestinal permeability can create further intolerances to foods that were not previously known as triggers. This can create a confusing cycle of symptoms and a growing accumulation of intolerance to foods that were previously well tolerated.
Other contributing factors to IBS
Allergic reactions and poor clearance of histamine can trigger an immune response that can further exacerbate or trigger symptoms. In perimenopause and menopause, the reduction in the protective effects of oestrogen and progesterone can prevent the effective clearance of histamine produced by mast cells in response to an allergen. This can in turn create more food and environmental allergies (pollen, dust, animal dander etc.) which can trigger or exacerbate IBS symptoms.
SIBO or small intestinal bacterial overgrowth is also commonly found with IBS, where some microbiota species such as Enterococcus, E. coli, and Klebsiella which are usually found in the large intestine, have migrated to occupy the small intestines. As a consequence, both IBS and SIBO can share a myriad of symptoms such as abdominal pain, bloating distention and diarrhoea.
Other risk factors of IBS include:
- A genetic predisposition
- A suboptimal diet
- Lifestyle behaviours (overuse of recreational substances, lack of exercise)
- Use of antibiotics
- Stress or trauma
- Anxiety or depression
IBS treatment – conventional treatments
Once diagnosed, the conventional approach to IBS involves dietary modifications such as the FODMAP diet, counselling to help reduce the effect of stress on the gut-brain connection, and pharmaceutical treatments for the suppression of symptoms. Drug therapies can include antispasmodic, antidiarrhoeal or laxative treatments that may have undesirable side effects such as mineral deficiencies or, in severe cases rendering the colon incapable of peristalsis. More recently, IBS treatments including psychological therapies such as CBT (Cognitive Behavioural Therapy) are becoming popular to improve stress-related IBS symptoms.
IBS symptoms can become worse over time if not treated effectively, and avoidance of some food/nutrient groups can lead to malnutrition if the person is not under the supervision of a nutrition expert. Haemorrhoids and anal fissures can also occur if IBS is left untreated.
Many people find their IBS symptoms don’t subside with these approaches, partly because the broader range of underlying factors aren’t widely understood in the conventional medicine space. Thankfully, IBS functional medicine natural treatment has been shown to have greater symptom management and higher quality of life outcomes for IBS patients.
IBS functional medicine testing considerations
Functional testing can provide insight into the causes or contributing factors of IBS, and along with a detailed case history, can deliver a more targeted, effective approach to solving your digestive concerns. Our functional medicine practitioners will analyse your test results to determine factors contributing to IBS.
Testing may include;
- Nutritional sufficiency
- SIBO
- Testing for pathogenic microbes such as E. coli, Giardia, Salmonella, or Shigella
- Food sensitivities or food intolerances
- Microbiome health and diversity
- Mould & mycotoxins
- Organic acid testing
- Standard blood chemistry from your GP
IBS treatment – the functional medicine approach
At Melbourne Functional Medicine, we seek to establish the root cause, or causes, of IBS, and focus treatment strategies on resolving these underlying issues.
Via thorough investigation, our IBS specialists will consider:
- your personal health history
- history of antibiotic use
- your family health history & genetic predispositions
- diagnostic test results (with a functional medicine view)
- current and historical medications
- other conditions
- and, your symptom picture
We’ll walk you through our holistic understanding of your particular case, explaining the factors we’ve identified as contributing to your IBS using the most up-to-date scientific insights.
Your IBS treatment may include a range of science-backed strategies depending on the factors influencing your condition to ensure your success. They may include:
- Improving stress resilience with strategies, such as mindfulness or meditation practices, breathwork or Shinrin-yoku (forest bathing)
- Specific dietary or nutritional changes to eliminate aggravating foods i.e. low histamine, low FODMAP (fermentable oligosaccharides, disaccharides, monosaccharides and polyols) diet, gluten-free, while adding in nourishing foods, specific to your case, such as the Mediterranean diet
- Precision antimicrobials, prebiotics, and probiotics, specifically targeted to your symptom picture
- Vitamins, amino acids and mineral supplements to ensure necessary cofactors for healing
One of our Melbourne IBS specialists, Mark Payne says “The gut is the seat of all health”, and helping to restore digestive function can provide relief for symptoms that may seem unrelated such as mood disorders, depression and anxiety, pain, skin conditions and more.
At Melbourne Functional Medicine, we pride ourselves on innovative delivery and clinical excellence, designed to empower and educate you to restore your health. In addition to working with a functional medicine practitioner, you’ll also have the ongoing support of a health coach. Your health coach will help you implement your personalised treatment plan, and provide you with the encouragement and support you need to be well again.
We’ve helped people just like you to be well, and symptom-free. Have a look at our patient success stories.

Case study
See how our approach helps our patients achieve better health and richer lives.
This case study follows Lola’s journey through the healthcare program. Her aim was to regain control of her persistent skin conditions, hormonal imbalances, and gut health issues that had been impacting her daily life.
Lola’s story
This case study follows Lola’s journey through the healthcare program. Her aim was to regain control of her persistent skin conditions, hormonal imbalances, and gut health issues that had been impacting her daily life.
When Lola joined the program, her primary health concerns included psoriasis on her scalp, perioral dermatitis (eczema) around her mouth, hormonal imbalances leading to heavy PMS symptoms, breast tenderness, and irregular cycles, as well as IBS characterised by bloating and constipation. These chronic conditions significantly impacted her quality of life.
Lola often felt physically and emotionally drained, as her previous efforts to manage these symptoms on her own had only provided partial relief. Recognising the need for accountability and structured support to implement lasting changes became evident from the very beginning of her journey.
An in-depth analysis of the problem
To identify the root causes of Lola’s health issues, several tests were conducted:
- P88 food sensitivity test: Identifies food intolerances and sensitivities that may contribute to her IBS and skin flare-ups.
- MyDNA comprehensive test: Uncovers potential genetic susceptibilities that may impact her metabolism and hormonal regulation.
- Nutristat: Aims to understand any nutrient deficiencies and imbalances in sex and thyroid hormones that may contribute to her fatigue, weight struggles, and inflammation.
- Coeliac test: Potential gluten sensitivity as a contributing factor to her IBS and gut inflammation.
Lola’s assessments uncovered several IgE-mediated food reactions, which she realised were contributing to her digestive issues and skin itching. Thankfully, testing confirmed that she is not susceptible to coeliac disease, providing some reassurance about her dietary options.
Her Nutristat results were relatively unremarkable, but the DNA test offered valuable insights for the future, including potential strategies to protect her brain health over time.
At-home digestive testing revealed an inability to digest a range of carbohydrates, indicating a dysbiotic gut environment that was likely driving her IBS symptoms. This assessment also highlighted poor-quality stomach acid, a factor that can exacerbate dysbiosis and indigestion, further compounding her digestive challenges.
Implementing the solution
To address Lola’s complex health concerns, a personalised protocol was designed by her practitioner alongside her coach. The protocol targeted her skin issues, hormonal imbalances, and gut health, all of which were closely interconnected.
The first step in her plan was the P88 elimination diet, designed to remove foods identified as triggers for her gut and skin issues. This dietary approach aimed to reduce inflammation in her gut, manage her IBS symptoms and bloating, and prevent perioral dermatitis flare-ups.
In addition to dietary changes, Lola’s protocol included targeted nutritional and herbal supplements. Betaine HCl was introduced to improve stomach acid levels, enhancing digestion and creating the proper pH environment for healthy bowel flora. Zn Bioactive was added for its immune-modulating and skin-healing properties, while Lactobacillus plantarum was included to restore healthy intestinal motility. PHGG prebiotic powder was also recommended to support the growth of beneficial bowel flora.
Stress management played a crucial role in Lola’s recovery, as stress was identified as a key trigger for her skin flare-ups and hormonal imbalances. Mindfulness techniques, such as yoga nidra and meditation, were introduced to help her manage emotional stressors. These practices allowed Lola to activate her parasympathetic nervous system, promoting calmness and creating an environment conducive to healing.
Lola faced several barriers during her journey that were addressed through ongoing health coaching.
One significant challenge was adapting to the P88 elimination diet. Lola found the diet restrictive and overwhelming, particularly as it required careful planning and preparation while her energy levels were low. Meal preparation initially felt like an insurmountable task.
To overcome this, her coach guided Lola in breaking down meal planning into small, manageable steps. They began by identifying a few simple, compliant recipes that she could repeat throughout the week. Together, they also worked on reframing food preparation from a tedious chore to an opportunity to nourish her body for energy and healing.
Another major barrier was Lola’s tendency to overextend herself through work and social commitments, leaving little room for rest. This constant state of busyness and productivity was a significant obstacle to her healing process. Her coach used motivational interviewing and active listening techniques to help Lola recognise the importance of slowing down. By regularly asking herself “What does my body need right now?” Lola began to prioritise rest and self-care, giving her body the space it needed to recover.
Lola also struggled to connect emotionally with her healing journey. She often felt disconnected from the process, overwhelmed by conflicting health advice and trends, and second-guessed her decisions. To address this, her coach introduced a visualisation and health vision-setting exercise, which helped Lola reconnect with her inner motivations. This exercise allowed her to define her health goals clearly and emotionally connect with the outcomes she desired. This newfound clarity became a turning point, enabling Lola to sustain her motivation and approach her health journey with confidence and focus.
Achieving an incredible result
One of the most transformative moments in Lola’s journey was the discovery of her food triggers. Identifying the specific foods that exacerbated her eczema and IBS symptoms provided her with clear guidance on what to avoid, leading to a significant reduction in flare-ups. For the first time, she had a practical tool to manage her eczema, which had previously “ruined” her life. This breakthrough gave her a sense of relief and hope, as she finally understood the connection between her diet and her health.
Another major high point was Lola’s growing sense of control over her body. After months of battling flare-ups and feeling powerless, she began to recognise and respond to her body’s cues. By understanding how her lifestyle choices impacted her health, she felt empowered to manage her symptoms effectively. As Lola shared, “I now know my triggers, and I feel like I’m finally in control of my eczema without needing steroids” . This newfound autonomy became a cornerstone of her confidence and healing.
Throughout the program, Lola also celebrated steady progress and milestones. Improvements in gut health, weight loss, and more balanced hormonal cycles were small but meaningful wins that reinforced her commitment to the process. Each milestone was a testament to her hard work and dedication, and celebrating these achievements helped her stay motivated and confident in her ability to continue making positive changes. These moments of progress marked her transformation and contributed to her overall success.
Ready for a personalised, natural functional medicine treatment?
Our unique model of care was designed with you in mind. Find out how, then book a call today
Frequently
Asked
Questions
What is the best diet for irritable bowel syndrome?
The best IBS diet depends on a variety of factors. There are some common foods to avoid for those with IBS, such as FODMAPs (certain fruits, vegetables, dairy and wheat), caffeine, alcohol, spicy foods, artificial sweeteners and histamine foods.
It is best to get assessed by a functional medicine IBS specialist before attempting to create an irritable bowel syndrome diet. Using a combination of functional testing, personalised assessment and IBS functional testing, our IBS specialists will seek to determine the root cause of your symptoms and tailor-make a health plan to get you feeling well again.
Can IBS be cured?
Absolutely. Lifestyle changes such as regular exercise, a balanced diet, adequate hydration and good sleep hygiene can significantly improve IBS symptoms.
How to calm irritable bowel syndrome?
Herbs such as peppermint, chamomile and lemon balm can help reduce cramping and pain associated with IBS, and ginger can help to calm the digestive tract by reducing inflammation, and it can also reduce bloating. These herbs can be taken as teas, and can also be prescribed in targeted IBS formulas.
As stress is a trigger for IBS flares, deep breathing and meditation can help calm the nervous system to then calm the digestive tract, alongside other stress management techniques, such as stimulating the vagus nerve.
How long do IBS flare ups last?
IBS flare-ups can last anywhere from a few hours to several days or even weeks, depending on the severity and individual triggers.
Typically, they subside within 2 to 4 days, but stress, diet, and other factors can prolong the duration. Managing symptoms often requires identifying triggers and making lifestyle adjustments.
Can stress cause irritable bowel syndrome?
Chronic stress, whether extreme or mild, can alter the pH of our gastrointestinal tract, which then determines the number, diversity and individual species that thrive there. This disruption can affect brain chemistry (as many of our neurotransmitters are made by our microbiota) contributing to how we manage stress, which can further disrupt the microbiome, leading to a vicious cycle.
Stress, mood disorders, and anxiety that impact the species of the microbiome can also then contribute to inflammation, due to chemical messengers called cytokines, changing gut motility (how our waste is moved through the bowel) and contribute to bloating, reflux and increased sensations of pain in the abdomen called visceral hypersensitivity associated with IBS.
Is irritable bowel syndrome hereditary - are you born with IBS?
More research is needed, however, there are some indications that irritable bowel syndrome may have a genetic component that runs in some families.
Can’t find what you’re looking for? Reach out to the team directly – we’ll be happy to assist.