Lupus: uncovering and addressing the root causes of autoimmune dysfunction

Living with lupus can feel overwhelming, with symptoms affecting multiple areas of health. Instead of masking symptoms, functional medicine takes a whole-body approach, working to balance the immune system and support long-term well-being.

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Natural treatment for systemic lupus erythematosus (lupus)

Looking for natural treatment options for lupus? This page covers:

At Melbourne Functional Medicine, we help people with lupus support their health and wellbeing with a holistic, revolutionary approach to healthcare.

What is lupus?

Understanding your condition

There are two main types of lupus, the first being systemic lupus erythematosus (or SLE), which is a systemic, multi-organ autoimmune condition where the body’s own immune system mistakenly attacks cells of different tissues of the body.

The second generally milder type of lupus is discoid lupus (or chronic cutaneous lupus erythematosus), which presents as a scaly rash on areas of sun-exposed skin. A few people with discoid lupus may develop SLE.

Other forms are subacute cutaneous lupus, which presents as milder skin rashes and joint aches; drug-induced lupus, which is transient and occurs in reaction to medications; and a rare condition called neonatal lupus affecting babies born to mothers with lupus.

a woman lying on a couch with her head on her hand
a woman lying on a couch with her head on her hand

What is lupus?

Understanding your condition

There are two main types of lupus, the first being systemic lupus erythematosus (or SLE), which is a systemic, multi-organ autoimmune condition where the body’s own immune system mistakenly attacks cells of different tissues of the body.

The second generally milder type of lupus is discoid lupus (or chronic cutaneous lupus erythematosus), which presents as a scaly rash on areas of sun-exposed skin. A few people with discoid lupus may develop SLE.

Other forms are subacute cutaneous lupus, which presents as milder skin rashes and joint aches; drug-induced lupus, which is transient and occurs in reaction to medications; and a rare condition called neonatal lupus affecting babies born to mothers with lupus.

a woman sitting on a bench holding a coffee cup and a phone

A natural way to treat lupus

People with lupus often seek holistic, natural treatments to support their health. The personalised, comprehensive and targeted approach to supporting those with lupus can include strategies to lower inflammation, calm the immune system and reduce pain, so that those with lupus can improve their health and get their life back.

Symptoms of lupus (systemic lupus erythematosus)

In lupus, the immune system attacks at a cellular level, affecting any tissue or organ in the body. Each person’s experience of lupus is different, as different parts of the body may be affected. Episodes generally subside after the initial attack, however, some people undergo brief flares during longer periods of remission.

Symptoms can include:

  • Joint pain and swelling (found in 50% of people with lupus)
  • Muscle pain
  • Swollen glands
  • Unexplained fever
  • Kidney inflammation called lupus nephritis
  • Chest pain, with deep inhalation
  • Loss of appetite / weight loss
  • Skin rashes – made worse with exposure to the sun (found in 20% of people with lupus), often on the face known as a ‘butterfly rash’
  • Fatigue, lethargy and weakness (found in 10% of people, but may be severe and debilitating)
  • Hair loss
  • Mouth or nose ulcers
  • Raynaud’s disease – pale / purple fingers and / or toes, when exposed to cold
  • Swelling around eyes and in the legs
  • Photosensitivity (especially to sunlight)
  • Oedema (water retention) to hands, feet and face
  • Anaemia and low iron status
  • Headaches, and inflammation of the nervous system and brain

Lupus occurs predominantly in women, however, 1 in 10 diagnosed with lupus are men, and while they can experience all of the above symptoms, they are more likely to develop:

  • Kidney disease and inflammation
  • Cardiovascular problems
  • Unexplained fever
  • Weight loss
  • Serositis – an inflammation of the membrane around the lungs, felt on taking a deep breath
  • Swelling of feet and hands
  • Antiphospholipid antibodies, increasing risk of blood clots and stroke
  • Low white blood cell count, and low iron

Diagnosis of lupus can be difficult, as symptoms mimic a range of conditions and there is no definitive test. Some immune system markers are common to people with lupus, such as Type 1 interferon, complement proteins C3 and C4 dysregulation, in addition to the presence of antinuclear antibodies (ANA) common to autoimmune conditions and anti-Smith antibodies found in 70% of people with lupus. However, the presence or absence of these markers does not definitively diagnose or exclude lupus but may support diagnosis.

Support your health, naturally

Causes of lupus

Like other autoimmune conditions, the definitive cause/s of systemic lupus erythematosus have not been established. However, current research is demonstrating that a complex interaction between genetic susceptibility and environmental triggers are heavily implicated in all autoimmune conditions. Known as epigenetics, this process explains how, in susceptible individuals, triggers such as those listed below can provoke the mistaken attack on ‘self’ cells that define autoimmune diseases.

The most common risk factors in lupus include:

  • Genetic predisposition / family history
  • Vitamin D deficiency – as a selective immune system regulator, Vitamin D inhibits autoimmune disease
  • Genetic MTHFR polymorphisms which can impair methylation (a process that is essential to healthy detoxification) but in particular simultaneous gene expression of DNMT1, DNMT3A, DNMT3B, MBD2 and MBD2
  • Viruses and infectious agents,(particularly the Epstein-Barr virus, also known as glandular fever or mononucleosis), measles, herpes and in recent evidence SARS-CoV-2
  • Being female
  • Sunlight exposure
  • Gluten and dairy consumption
  • Having Coeliac disease or another autoimmune condition
  • About 10% of all lupus cases are drug-induced. Specific medications such as penicillin and other antibiotics, and sun sensitising drugs; sulfa drugs (Bactrim®, Septra®, Gantrisin®, Orinase®, Azulfidine®), and tetracycline drugs (Minocin®) are linked to the development of lupus
  • Smoking/vaping
  • Chronic stress/trauma including adverse childhood experiences (ACEs)
  • Exposure to heavy metals such as mercury (e.g. in dental fillings and fish), toxins, and chemicals such as organic solvents
  • Mycotoxins from mould exposure
  • Being of Hispanic, Pacific Islander, Asian, Native American or African descent means a greater likelihood of developing lupus at a younger age, and with higher mortality and more serious complications
  • A 5-fold greater representation of gut species Ruminococcus gnavus found in people with lupus nephritis
  • Digestive disorders such as intestinal hyperpermeability (aka leaky gut), poor gastric secretions, SIBO, IBS, IBD, and fungal infections such as Candida albicans
  • Gut microbiome dysbiosis, in particular, the lack of Bacteroides uniformis (which inhibits the growth of Ruminococcus gnavus). Certain dysbiotic bacteria have been associated with autoimmune activation, such as Citrobacter, Klebsiella, and Proteus species

Lupus treatment – the conventional approach

There is no medical cure for lupus to date. Systemic lupus erythematosus conventional treatment by an SLE specialist includes medications to control symptoms and help manage the condition. Medications are often given in addition to exercise recommendations and lifestyle changes, such as stopping smoking, avoiding sun exposure and stress management. A new classification criteria based on the signs and symptoms can aid in directing treatment strategies.

Your SLE specialist may prescribe medications such as:

  • Pain relief: paracetamol
  • Inflammation reduction: corticosteroids (not recommended long term), and  non-steroidal anti-inflammatory drugs (NSAIDs) for reducing inflammation (for short term use only, but not for use with kidney disease)
  • Skin and joint symptoms: hydroxychloroquine medications, to reduce immune system activity
  • Control of immune function: disease-modifying  anti-rheumatic drugs (DMARDs) which somewhat suppress the immune overactivity
  • Suppression of immune function: in moderate to severe cases immunosuppressant drugs such as azathioprine, mycophenolate, mofetil, cyclosporine, leflunomide, cyclophosphamide and methotrexate

All medications have side effects, with some of these drugs requiring close monitoring by specialists due to the significance of side effects. Some immune-suppressing drugs can also impair the body’s ability to fight off infections.

Conventional treatments do not address the underlying causes or factors contributing to lupus, and along with some very uncomfortable side effects, is why people with lupus often seek natural ways to improve their health after a lupus diagnosis. Alternative treatment options can include the functional medicine approach that supports each person with lupus holistically and naturally.

Natural treatment for people with lupus – the functional medicine approach

From a functional medicine standpoint, natural treatment for people with lupus starts with an in-depth history taking, which will look at medical history, genetic predispositions, environmental exposures, diet, medications and more to determine what the root cause triggers may be, and what other contributing factors may be exacerbating symptoms and disease progression.

Your functional medicine practitioner will design a detailed, personalised treatment strategy with targeted herbal, lifestyle, and supplemental medicine and dietary changes to address specific symptoms, support organ function, reduce inflammation and modulate the immune system to reduce attacks on the body. They will also factor in maintaining robust immune function for fighting off the usual colds, flu and other viral and bacterial infections.

Depending on the patient and their health picture, these strategies may include:

Testing for:

  • Food intolerances, allergies and sensitivities
  • Gut dysbiosis, intestinal hyperpermeability and parasites
  • Heavy metals, mould and mycotoxin exposure
  • Methylation dysfunction
  • Blood tests depending on your symptoms

Dietary changes:

  • Include/increase consumption of – anti-inflammatory foods, lecithin, Omega 3 fatty acids via wild-caught oily fish (sardine, mackerel, anchovies, salmon and herring), plant flavonoids found in colourful fruits and vegetables, berries, healthy fats such as coconut, avocado and extra virgin olive oil, nuts and seeds, only grass fed animal foods, garlic, onion, mushrooms, and eggs
  • Avoid all processed foods and soft drinks, sugar, alcohol, coffee, black tea, dairy and wheat, gluten, smoked and cured meats, as inflammatory foods/triggers
  • Increase fibre intake to improve and support gut microbiome diversity and makeup
  • Eliminate identified food sensitivities, allergies or intolerances

Supplementary nutrients:

  • Glycine an amino acid to support antioxidation, liver detoxification, sleep and anxiety
  • Digestive enzymes – to ensure digestion and absorption of vital nutrients
  • Selenium, magnesium, and Vitamin D3 – to reduce autoimmunity
  • Vitamins B6, B12 and folinic acid – for healthy methylation
  • R-lipoic acid, N-acetyl cysteine, Vitamin C, tocotrienols – antioxidants, energy production
  • CoQ10, resveratrol – antioxidants for heart and nerve health, and energy
  • Precision probiotics for improving gut microbiota diversity and makeup

Herbal medicines:

  • California poppy, Jamaican dogwood, and white willow for pain management
  • Boswellia, turmeric, bupleurum, ginger and cat’s claw as anti-inflammatories
  • Ginkgo biloba, gotu kola, and bacopa for healthy cognitive and nerve function
  • Reishi mushroom and echinacea for immune modulation
  • St Mary’s thistle (Silybum marianum), globe artichoke to support detoxification

Lifestyle medicine:

  • Gentle exercise to maintain mobility, such as walking, Tai chi, yoga and forest bathing, and massage
  • Techniques for building stress resilience via vagal nerve stimulation, singing, gargling, massage, and meditation/mindfulness practices

Topical treatments:

  • Creams or lotions, individually compounded with botanicals, nutrients, minerals, and therapeutic oils to reduce inflammation and irritation of the skin

In addition, your practitioner will be mindful of optimising immune resilience, for reducing the reactivation of Epstein-Barr virus, and for reducing the risk of SARS-CoV-2 infection and long COVID symptoms.

If you’re looking for holistic, personalised and supportive care that gets results, we’d love to help. One of our functional medicine practitioners at Melbourne Functional Medicine will guide you towards better health. Working alongside your practitioner and your health coach, you’ll have all the support, health breakthroughs and direction you need to meet your health goals and get back to living life.

Ready for a personalised, natural functional medicine treatment?

Our unique model of care was designed with you in mind. Find out how, then book a call today

Frequently

Asked

Questions

Is lupus hereditary?

Yes, lupus (systemic lupus erythematosus, or SLE) has a genetic component, and people with a family history of autoimmune conditions are at higher risk.

However, having a genetic predisposition does not guarantee you will develop the disease. Lupus usually develops from a mix of genetics and environmental triggers, such as:

  • Infections (e.g. viral or bacterial)
  • Environmental toxins (heavy metals, pesticides, exhaust fumes)
  • Smoking or certain medications
  • Gut or immune system imbalances

By identifying and removing these triggers, symptoms can often be reduced and, in some cases, remission achieved. A functional medicine practitioner can help uncover your individual risk factors and create a tailored plan to support immune balance.

Can functional medicine cure autoimmune disease?

No, autoimmune diseases cannot be “cured”. However, functional medicine can be highly effective in managing them by addressing the root causes, reducing symptoms, and supporting long-term wellbeing.

A functional medicine approach to autoimmune disease often includes:

  • Dietary and nutritional strategies to lower inflammation
  • Targeted supplements and herbal medicine to support immune balance
  • Lifestyle interventions such as stress reduction, sleep optimisation, and gentle exercise
  • Personalised treatment plans based on functional testing and your unique health history

While it cannot offer a cure, this holistic approach can significantly improve quality of life and may even help some people achieve remission.

What is the best natural treatment for lupus (systemic lupus erythematosus)?

Lupus, or systemic lupus erythematosus (SLE), is best managed with a holistic plan tailored to your unique triggers and health history.

A functional medicine practitioner can work alongside your lupus specialist to:

  • Investigate root causes such as genetics, environmental exposures, medications, or infections
  • Support immune balance naturally through diet, lifestyle, and targeted supplements
  • Reduce medication side effects with complementary strategies that strengthen resilience

This approach focuses on treating the whole person, not just suppressing symptoms, helping you to manage lupus naturally and improve long-term wellbeing.

Is systemic lupus erythematosus an autoimmune disease?

Yes. SLE is an autoimmune condition where the immune system mistakenly attacks the body’s own tissues, treating them as if they were harmful intruders.

One leading theory is called molecular mimicry: when a virus, toxin, bacteria, or chemical closely resembles the body’s own tissue, the immune system becomes confused and continues to attack even after the trigger is gone.

A functional medicine approach to lupus focuses on:

  • Identifying and removing triggers that may confuse the immune system
  • Supporting immune regulation naturally with diet, lifestyle, and targeted therapies
  • Creating a personalised plan that complements conventional care and helps reduce flare-ups

Is there a way to reverse lupus?

No one can guarantee the reversal of lupus or any autoimmune condition. However, with a carefully targeted, holistic strategy, some people may achieve remission and experience significant improvement in symptoms and quality of life.

A functional medicine approach to lupus focuses on:

  • Identifying and removing triggers such as infections, toxins, or dietary factors
  • Supporting immune balance through nutrition, lifestyle, and targeted supplements
  • Working alongside conventional care to reduce flare frequency and improve resilience

By combining conventional and functional approaches, it’s possible to create a personalised plan that supports long-term health and wellbeing.

What is the difference between lupus and systemic lupus?

Lupus is most often used as shorthand for systemic lupus erythematosus (SLE), the most common and serious form of the condition. SLE is called systemic because it can affect multiple organs and systems in the body, leading to a wide range of symptoms that vary from person to person.

Other, less common forms of lupus include:

  • Discoid lupus: usually limited to the skin, causing scaly rashes on sun-exposed areas
  • Subacute cutaneous lupus: causing milder skin rashes and joint aches
  • Drug-induced lupus: triggered by certain medications, typically reversible when the drug is stopped
  • Neonatal lupus: a rare condition affecting babies born to mothers with lupus

Each type presents differently, but all share the autoimmune mechanism where the immune system mistakenly attacks healthy tissue.

What are the first signs of lupus?

The first signs of lupus can vary from person to person, but some of the most common early symptoms include:

  • Persistent fatigue that doesn’t improve with rest
  • Joint pain or stiffness, often in the hands, wrists, or knees
  • Skin rashes, especially a butterfly-shaped rash across the cheeks and nose
  • Unexplained fevers
  • Photosensitivity, where skin flares after sun exposure
  • Hair loss or thinning
  • Mouth ulcers

Because lupus can affect multiple systems in the body, symptoms may be mild, intermittent, or progress gradually. Early recognition is important, as prompt investigation and a functional medicine approach can help identify triggers, reduce inflammation, and support long-term wellbeing.

Can’t find what you’re looking for? Reach out to the team directly – we’ll be happy to assist.