Recurrent UTI: preventing infections by addressing root causes
Frequent UTIs can signal underlying issues with the urinary or immune system. Functional medicine identifies triggers, supporting urinary health and immune function for long-term prevention.

Natural treatment for recurrent urinary tract infections
Looking to discover the functional medicine approach to UTIs? This page covers:
At Melbourne Functional Medicine, we’ll work with you to identify and address the root cause of your recurrent UTI so you can get back to feeling well.
What are recurrent urinary tract infections (UTIs)?
Urinary tract infections are the infection of any part of the urinary tract (urethra, bladder, ureters, or kidneys). Women experience UTIs more than men (around 50-60% of women will experience one or more), and women are much more likely to experience recurrent infections.
Infections may be due to congenital abnormalities, or they may be due to other health conditions or medical procedures, however, most often the cause is bacterial infection by Escherichia coli (E. coli) in the urethra, bladder, vagina or kidneys. Left untreated, this infection can cause damage to the kidneys and bladder.


What are recurrent urinary tract infections (UTIs)?
Urinary tract infections are the infection of any part of the urinary tract (urethra, bladder, ureters, or kidneys). Women experience UTIs more than men (around 50-60% of women will experience one or more), and women are much more likely to experience recurrent infections.
Infections may be due to congenital abnormalities, or they may be due to other health conditions or medical procedures, however, most often the cause is bacterial infection by Escherichia coli (E. coli) in the urethra, bladder, vagina or kidneys. Left untreated, this infection can cause damage to the kidneys and bladder.

Functional medicine for recurrent UTIs
Up to 60% of women will experience a recurrence of a UTI within a year of the first infection. Recurrent infection is defined as 2 episodes within 6 months or 3 within 12 months. Antibiotics are the usual treatment prescribed, however they can come with side effects such as candida, diarrhoea, nausea, vaginal burning, and headache. Antibiotics are great at killing bacteria, however, they are indiscriminate, killing beneficial gut flora as well as those bacteria that are being targeted.
The good news is there are natural and effective ways to break the cycle of recurrent UTIs with functional medicine.
Recurrent UTI symptoms
Urinary tract infection, including recurrent or constant UTI symptoms, can include:
- Burning or pain on urination
- Frequent urges to urinate, often passing only a small amount of urine
- Pain in the lower abdomen, or lower back
- Pain or uncomfortable pressure above pubic bone
- Cloudy urine (blood, or pus) – this is rare
- Fatigue/tiredness
- Vomiting, nausea
- Dark, cloudy or reddish urine
- Fever and pain in the side when a kidney infection is present
- Purulent (pus) discharge from penis in males
- Cognitive decline or confusion in the elderly
On some occasions, there may only be frequent urination, or no symptoms at all.
Treat the cause, naturally
What causes recurrent UTIs?
Infections of the urinary tract are caused by bacteria proliferating and being poorly controlled by the immune system. This can be:
- A structural problem
- Due to a blockage
- Backflow of the urine
- Urine not being fully evacuated from the bladder, providing an ideal place for bacteria to grow
- Bacteria introduced through surgery
- Frequent sex
- Medical procedures/devices
- Neurological conditions, which can affect the signal the body gets to empty the bladder, which can result in poor evacuation
- Immunosuppression can impair the ability of the body to fight off bacterial infections
UTI’s can be characterised into two types:
Uncomplicated UTIs
An uncomplicated UTI is usually a bacterial infection by Escherichia coli (E. coli) in the urethra, bladder, vagina or kidneys. This type of infection is responsible for more than 80% of UTIs. Staphylococcus saprophyticus accounts for 10-20% of uncomplicated UTI’s, and Klebsiella pneumoniae, Corynebacterium urealyticum, Proteus, Enterobacter, Pseudemonas spp. are much less common, and are usually associated with other health conditions, or due to medical procedures.
Complicated UTIs
Complicated UTIs, as the name suggests, are due to other complications in the body, such as:
- Congenital abnormalities causing reflux of the urine (flowing back up the urinary tube), obstruction that blocks the flow of urine, or polycystic kidney disease
- Obstruction by ‘stones’, stricture or bladder outlet obstruction
- Bladder tumour
- Medical treatment e.g. a stent, catheter, urinary or faecal incontinence, sling procedure, or surgery
- Poor bladder emptying, increased ‘post void residue’
- Neurological disease affecting signal to urinary tract, e.g. Parkinson’s disease, MS, spinal chord injury, diabetes, peripheral neuropathy
- Other health states/conditions – pregnancy, immunosuppression, kidney failure, kidney transplant, fistula between bladder and bowel
- Hospital-acquired infection
Risk factors for recurrent UTIs
There is some overlap between the causes of UTIs, and the risk factors for recurrent UTIs, which include:
- Poor hydration, a common factor in recurrent UTIs
- Poor personal hygiene, transmitting bacteria from the rectum to vagina
- Female anatomy i.e. the short length of urethra and the proximity of the vagina to the rectum
- Pregnancy
- Coffee (for some people) can stimulate the bladder sphincter to close
- Immunocompromised people
- Frequent intercourse, and not urinating after sex
- Perimenopause & menopause
- Urinary incontinence
- Change of bacterial flora of the vagina (use of diaphragm/spermacides, or personal care products, douches)
- Personal hygiene of male partners
- Use of catheters
- Hospitalisation, or medical procedures
- Family history (a genetic factor that is related to blood group, and hormone balance)
- Anatomical factors – a short distance between the vagina and anus
- Pelvic prolapse
- Obstruction – polyps, stones, or stricture causing recurrent blockages
- Neurogenic bladder dysfunction – related to MS, spina bifida, Parkinson’s disease, stroke, spinal cord injury, heavy metal poisoning, benign prostate hyperplasia, cauda equina syndrome, stroke, syphilis and diabetes mellitis
- Thickening or loss of elasticity of the walls of the ureters, or bladder
Recurrent UTI treatment – the conventional approach
Women frequently present to their GP with UTIs, and the most common treatment approach is to prescribe antibiotics.
Your GP may test your urine to look for signs of infection or blood, and it is common for testing to be negative or inconclusive. Testing of midstream urine quantities of E. coli bacteria can be inconclusive depending on the quantity of bacteria found, and your doctor will most often diagnose UTIs based on your symptoms and past history.
Your GP may also refer you for further testing, to rule out other causes of your symptoms.
Antibiotic treatments can be taken in a range of ways; continuous prophylaxis to reduce the risk of contracting UTIs, a single dose after sex, or when an infection is present.
Treatment of UTIs with antibiotics can have a significant impact on the gut flora, which can lead to candida overgrowth, and for many women with recurrent UTIs, it is a perpetual cycle of alternating UTI and candida infection. This can be very frustrating and leads people to seek out a specialist for recurrent UTIs who provide lasting and natural solutions.
Recurrent UTI treatment – the functional medicine approach
Chronic UTI natural treatment with a functional medicine practitioner starts with an in-depth and comprehensive investigation to identify the root cause and contributing factors of your UTIs, and why it is recurrent.
In an in-depth initial consultation, we investigate:
- Your lifetime medical history
- Medications and supplements
- Surgeries and accidents
- Family and genetic history
- Environmental exposures
- Symptom history
- Nutrition, diet and absorption
- Lifestyle factors and stress
- Your sleep history, symptoms and sleep hygiene practices
Your natural UTI practitioner may recommend functional testing to help determine the cause of your UTI, or to investigate baseline health, with tests such as:
- Microbiome and stool testing – looking for gut flora dysbiosis, or parasites
- Specific markers for inflammation, digestive function & nutrient absorption
- Food sensitivities and allergy testing
- Heavy metal or environmental toxin exposure
- Hormone levels
- Mineral analysis
- Urine metabolite testing
Depending on your results and symptoms, a personalised recurrent UTI functional medicine treatment may target the following causes of recurrent UTIs:
- Removing causative factors such as food intolerances/allergies, or make dietary changes to a more alkaline diet to alter urinary pH
- Improve pain and discomfort of urination, or inflammation to urinary tract
- Restoring a healthy microbiome – many conditions are related to poor digestion and dysbiosis and can precipitate UTIs. Chronic use of antibiotics can disrupt the types and numbers of species of your gut flora, allowing UTIs to occur. Candida infections can also contribute to this dysbiosis
- Improve stress resilience, depression and anxiety which can inhibit the ability of the immune system to adequately fight infections
- Regulating blood sugar and insulin levels – unregulated blood sugar can contribute to altering the pH of the bladder, contributing to the infection
- Nutrient absorption and vitamin deficiencies – due to poor diet or, digestive dysfunction (or stress) may mean insufficient levels of important vitamins and minerals required for healthy immune function, healthy linings of the urinary system, and resolving inflammation, such as magnesium, iron, vitamin D, zinc and selenium
- Intestinal hyperpermeability (leaky gut) – can allow foreign particles to cross over from the intestines and into circulation, causing inflammation and triggering the immune system to overreact, creating gastrointestinal disturbances such as indigestion that can contribute to recurrent infections
- Reduce the impact of medications and other health conditions – with holistic functional medicine treatment strategies
Natural remedies for a recurrent UTI including dietary, lifestyle, herbal and supplemental strategies may include (depending on your condition):
- Dietary recommendations may include an anti-inflammatory diet, or a specific diet plan personalised to your body’s needs – eliminating any food intolerances, allergies or sensitivities e.g. gluten, dairy, eggs, soy and sugar
- Eliminate environmental toxins such as heavy metals, chemicals, pesticides, mould which can interfere with digestive function, pH, and hormone balance
- Reducing or eliminating alcohol consumption, which can impair gut microbiome health
- Reducing/eliminating coffee
- Ensure healthy hydration – a minimum of 2L of water per day can prevent stagnation/concentration of urine in the bladder, and promote healthy urination
- Improve vitamin status with dietary changes and supplemental medicines, e.g. vitamin C increases acidity of urine, which inhibits bacterial growth
- Precision probiotic treatment to assist in increasing microbiota species diversity and make-up, which has multiple beneficial effects, including reducing bacterial overgrowth, reducing fungal overgrowth (e.g. candida) and byproducts of some species provide support for endothelial cells that line the urinary tract
- Supplements such as D-mannose (a naturally occurring sugar found in fruits which can reduce recurrence and symptoms of UTIs) in combination with cranberry extract, vitamin A, zinc (both essential for immune health), magnesium citrate (for alkalinity of the urine), L-arginine (a naturally occurring amino acid required for healthy urinary tract function), N-acetyl cysteine (prevents bacterial biofilm) and quercetin can heal and restore urinary tract health to prevent recurrent UTIs
Herbal medicines for a recurrent UTI include:
- Antimicrobials/urinary antiseptics such as berberine, cranberry, garlic (garlic specifically exhibits anti E.coli activity), uva-ursi, gotu kola, goldenseal, thyme
- Urinary demulcents that soothe the urinary tract such as couch grass, licorice, marshmallow, corn silk
- Anti-inflammatories such as garlic, turmeric (curcumin), bilberry, yarrow, and boswellia
- The herb gravel root that helps to prevent stone formation in the bladder
These are some of the strategies that our functional medicine practitioners may use to resolve recurrent UTIs. Treatment is personalised to each person, and in our unique program, you’ll have the support of your functional medicine practitioner to guide and direct your treatment, and a health coach to help you navigate the journey back to good health with ease.
Ready for a personalised, natural functional medicine treatment?
Our unique model of care was designed with you in mind. Find out how, then book a call today
Frequently
Asked
Questions
How to get rid of a UTI?
Getting rid of a UTI naturally involves more than just relieving symptoms – it requires addressing the factors that allow bacteria to grow.
Some strategies that may help include:
- Staying well hydrated to flush bacteria from the urinary tract
- Using herbal antimicrobials such as cranberry, garlic, or berberine to target bacterial overgrowth
- Soothing the urinary tract lining with herbs like corn silk, marshmallow root, or licorice
- Reducing inflammation with turmeric, boswellia, or bilberry
- Supporting microbiome balance through diet and, in some cases, targeted probiotics
At Melbourne Functional Medicine, our practitioners take a root-cause approach to recurrent UTIs. This means looking beyond short-term relief to identify why infections are happening and creating a personalised plan to support long-term urinary health.
Why do I keep getting urinary tract infections?
Recurrent urinary tract infections (UTIs) can be caused by a range of factors that create an environment where bacteria are more likely to thrive.
Some common contributors include:
- Genetic factors such as structural abnormalities in the urinary tract
- Poor hydration (not drinking enough water)
- Other health conditions including diabetes, pregnancy, perimenopause, menopause, Parkinson’s disease, multiple sclerosis, or spinal cord injury
- Medical procedures such as catheters or surgery
- Low immune resilience, microbiome imbalances, food intolerances, or allergies
- Sexual activity, particularly frequent or new partners
- Contraceptive devices such as diaphragms and spermicides
At Melbourne Functional Medicine, our practitioners take a functional medicine approach to help identify the reasons behind chronic UTIs and provide natural strategies to support long-term urinary tract health.
Can recurrent UTIs be a sign of cancer?
Bladder cancer can easily be misdiagnosed with a UTI.
If you have any concerns, talk to your GP.
Bladder Cancer Australia has some information on what to look for. If you have blood in your urine, it doesn’t necessarily mean you have bladder cancer, however you should see your GP to check.
What is the best probiotic for chronic UTI treatment in Australia?
The best probiotic for chronic UTIs is one that helps restore balance to your microbiome, and the right choice depends on the underlying cause of the imbalance. A functional medicine approach often uses precision probiotics that target specific strains linked with urinary and gut health.
These may include strains such as:
- Lactobacillus crispatus LCRO1
- Lactobacillus fermentum LF10
- Lactobacillus acidophilus LA02 (for women)
- Lactobacillus plantarum 6595
- Lactobacillus plantarum HEAL9
- Lactobacillus paracasei 8700:2
- Lactobacillus rhamnosus GG
- Bifidobacterium animalis subsp. lactis BS01
These strains can assist with supporting the vaginal microbiome, reducing recurrence, and restoring gut flora health during or after antibiotic treatment.
What is the best natural treatment for recurrent UTIs?
The best natural treatment for recurrent UTIs is one that addresses your unique circumstances and investigates why infections are happening in the first place. A functional medicine approach focuses on identifying root causes and creating a personalised plan to reduce recurrence.
Some simple but effective strategies that may help include:
- Staying well hydrated: research shows many women with recurrent UTIs aren’t drinking enough water, leading to concentrated urine and a pH change that allows bacteria to thrive
- Good hygiene practices: such as wiping front to back after using the toilet to avoid transferring E. coli from the anus to the vagina
- Avoiding spermicides and harsh personal hygiene products near the vaginal area, which can disrupt the microbiome and increase infection risk
At Melbourne Functional Medicine, our practitioners take a holistic and natural approach to recurrent UTIs, supporting long-term urinary tract health by uncovering and addressing the underlying causes.
Is there natural treatment for chronic UTIs in Melbourne?
Yes – at Melbourne Functional Medicine, our practitioners provide natural support for recurrent and chronic UTIs. Care is personalised and designed to address the underlying factors that make infections more likely, rather than just managing symptoms.
A functional medicine approach may include:
- Lifestyle strategies to reduce infection risk
- Dietary changes to support urinary and microbiome health
- Herbal and natural medicines with antimicrobial or anti-inflammatory properties
If you’d like to explore whether this approach is right for you, book a free discovery call with our team.
Can’t find what you’re looking for? Reach out to the team directly – we’ll be happy to assist.